Players control their character with a virtual joystick on the left side of the screen, while looking around the game's environments is controlled by swiping or dragging on the screen. The game is controlled using virtual buttons on-screen a virtual control stick is used for movement, while aiming is achieved by swiping on the screen. There are three controllable characters in the game Chief Warrant Officer 'Chief' Warrens (the protagonist from Sandstorm), Sergeant Anderson, and Private Newman, who are members of Delta, Razor, and Mustang Squads, respectively.
As with Sandstorm, Black Pegasus plays similarly to Call of Duty 4: Modern Warfare and Call of Duty: Modern Warfare 2, as players travel through various environments, such as a snowy mountain and a jungle.